Building and querying a kraken2 database

🚀 Course Title: Building and Querying a Kraken2 Database

🧬 Course Headline: Master Next Generation Sequencing (NGS) with Kraken2: Your Key to Unlocking the Secrets of Metagenomics!

Dive into the World of Metagenomics with Kraken2! 🦑

Welcome to our comprehensive online course where you'll learn to harness the power of Kraken2, a state-of-the-art tool for classifying unknown samples in NGS data. This course is designed for enthusiastic biologists, medical researchers, and anyone fascinated by metagenomics who want to explore the vast and diverse world of microbial life with speed and precision.

Why Kraken2?

Kraken2 stands out as a leading tool in the field of metagenomics due to its rapid sample classification and ease of use. It's not just a tool for research; it has real-world applications across various disciplines, including biology, medical research, and even geology.

What You'll Learn:

• Introduction to Kraken2: We'll start with a general overview of the algorithm and the database language that powers this metagenomics classifier.

• Hands-On Experience: By downloading real read data sets from the SRA (Sequence Read Archive) at NCBI, you'll build your own kraken2 database using whole genome sequences and classify samples against it.

• Data Visualization with Pavian: Learn how to visualize your results using Pavian's Stankey diagrams. These visualizations are not only informative but also suitable for publication in scientific journals.

Course Highlights:

✅ Essential Skills: Acquire the essential skills needed to perform metagenomics analysis and gain a competitive edge in your field of study or research.

✅ Real-World Data: Work with actual NGS data sets from the SRA database, providing you with hands-on experience that translates directly to practical applications.

✅ Scientific Communication: Understand how to effectively communicate and visualize your findings using Pavian software, enhancing your ability to publish research.

Prerequisites for Success:

💻 A basic understanding of Linux commands is required. Fear not! We'll cover the essential commands you need in detail during the course, ensuring you're well-prepared.

Your Journey into Metagenomics Awaits!

By completing this course, you'll be equipped with the knowledge to build and query a kraken2 database, enabling you to classify unknown samples with confidence and accuracy. Whether you're looking to advance your research or simply satisfy your curiosity about microbial diversity, this course will provide the foundational skills necessary for success in the exciting field of metagenomics.

Enroll Now and Unlock the Mysteries of Microbial Life with Kraken2! 🕺