Whole Genome Variant Calling @ Galaxy

🎓 Course Title: Whole Genome Variant Calling @ Galaxy

🚀 Course Headline: Master GATK4 Variant Calling Pipeline with Dr. Rashid Saif

Course Description:

Are you a life sciences student feeling overwhelmed by the complexity of NGS (Next-Generation Sequencing) data analysis? Do you prefer a user-friendly platform over the intricacies of Linux and command-line interfaces (CLI)? Our online course "Whole Genome Variant Calling @ Galaxy" is designed just for you!

Why Choose This Course?

• Accessibility: No need to navigate complex Linux operating systems or struggle with CLI tools. With Galaxy, a powerful and intuitive platform, you can conduct your NGS data analysis effortlessly.

• Comprehensive Learning: This course is perfect for undergraduate and postgraduate students across disciplines such as biotechnology, microbiology, biochemistry, and molecular biosciences. It empowers you to work independently from data retrieval to manuscript publication.

• Resource Efficiency: We understand that not everyone has access to cloud computing or high-performance computing cluster facilities. This course guides you on how to effectively analyze multi-omics data with limited resources and without deep technical expertise in programming, scripting, or advanced computer languages like Python.

Course Highlights:

🔍 Learn GATK4 Workflows: Get hands-on experience with the latest version of the Genome Analysis Toolkit (GATK4) for variant calling.

🛠️ No Coding Skills Required: This course is designed to help you navigate the world of NGS data analysis without needing prior knowledge in coding or scripting.

📊 Practical Application: After mastering the basics, you'll be well-prepared to explore more advanced analyses using Linux CLI and bash scripting for larger genomic datasets.

What You Will Learn:

• The fundamental concepts of NGS data analysis focusing on variant calling with GATK4 in Galaxy.

• How to retrieve, visualize, and analyze large genomics datasets without the need for high computational resources.

• Practical skills to manage and process your data using Galaxy's user-friendly interface.

• The importance of bioinformatics tools in understanding biological processes and their applications in research.

Course Structure:

1. Introduction to NGS Data Analysis: Overview of NGS technology and the role of variant calling in genetic analysis.

2. Setting Up Your Galaxy Environment: Getting started with Galaxy, understanding the workspace, and setting up your first project.

3. GATK4 Variant Calling Pipeline: Step-by-step guidance through the GATK4 pipeline, from data quality control to variant calling.

4. Data Analysis and Interpretation: Techniques for analyzing the results, interpreting variants, and preparing your findings for publication.

5. Real-World Applications: Explore case studies where variant calling has led to significant discoveries in genomics.

Who Is This Course For?

• Undergraduate and postgraduate students in life sciences disciplines.
• Researchers looking to transition from benchwork to bioinformatics.
• Educators who wish to introduce their students to modern bioinformatics tools.

Enroll now to embark on your journey into the world of genomic data analysis with "Whole Genome Variant Calling @ Galaxy" and unlock the potential of your research! 🧬📚✨